Test results over the last eight years have shown a stabilization in lake clarity, announced the Lake Tahoe Research Group in March 2009. Fine sediment, much of it resulting from land disturbance in the basin, accounts for about half of the loss in clarity.
Lake Tahoe is a tributary watershed drainage element within the Truckee River Basin, and its sole outlet is the Truckee River, which continues on to discharge to Pyramid Lake. Because of the sensitivity of Truckee River water quality (involving two protected species, the cui-ui sucker fish and the Lahontan cutthroat trout), this drainage basin has been studied extensively. The primary investigations were stimulated by the U.S. Environmental Protection Agency, who funded the development of the DSSAM model to analyze water quality below Lake Tahoe.
Lake Tahoe never freezes. Since 1970, it has mixed to a depth of at least 1,300 ft (400 m) a total of 6 or 7 times. Dissolved oxygen is relatively high from top to bottom. Analysis of the temperature records in Lake Tahoe has shown that the lake warmed (between 1969 and 2002) at an average rate of 0.015 °C per year. The warming is caused primarily by increasing air temperatures, and secondarily by increasing downward long-wave radiation. The warming trend is reducing the frequency of deep mixing in the lake, and may have important effects on water clarity and nutrient cycling.